PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462936948
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 335aa    MW: 36540.6 Da    PI: 6.5562
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462936948genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.98.8e-14229313383
                EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
         B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                k+lt+sdv + gr+vlpkk ae+   ++++  s  l++ d     +W++k+++  ++ks++y+l+    eFvk +gL++gD ++++
  462936948 229 KELTKSDVANVGRIVLPKKDAEASlpQLVHGDSLILQMDDmVLPITWKFKYRFwpNNKSRMYILE-AAGEFVKTHGLQAGDALIIY 313
                899******************99999999888766676664445*******99888888888888.99***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-19226324IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-14227314IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.9E-7227327IPR003340B3 DNA binding domain
CDDcd100171.89E-19229324No hitNo description
PfamPF023622.4E-10229313IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGQMGGGDGD GGGHPHPYHY QALLAAVQNP NQTLHPFSLP FPFPTGPGAD ASPHNAAPHS  60
QTPRGFSDWS ASNSAFSSLA GQPAPATTNS AFNYNLSPSY ALWTHCMLNK NVSYSYPAPH  120
EDHAHSLRHS HNQDRESGSA PSLGVESFTT MSLGPNICTQ MSPMDGSIST KEADNSEDLP  180
TVVRSSDEME IRNSGEFHRE TVGPLPESNH HESCTTKFNT GEYQVVLRKE LTKSDVANVG  240
RIVLPKKDAE ASLPQLVHGD SLILQMDDMV LPITWKFKYR FWPNNKSRMY ILEAAGEFVK  300
THGLQAGDAL IIYKNTVPGK FIIRGEKAIQ QATNS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140504.11e-171putative B3 DNA binding domain family protein
SwissprotQ6Z1Z31e-127IDEF1_ORYSJ; B3 domain-containing protein IDEF1
TrEMBLA0A0A8XSY40.0A0A0A8XSY4_ARUDO; Uncharacterized protein
STRINGGRMZM2G125596_P011e-170(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113462831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.14e-34B3 family protein